Author
Harvard UniversityORCID 0000-0002-7963-0253Unclaimed ORCID profile · follow to get notified of new preprints
8 papers
Recent·Most cited
Joshua Shing Shun Li, Ying Liu, Ah‐Ram Kim, Mujeeb Qadiri, Jun Qiang Xu, Baolong Xia, Richard C. Binari, John M. Asara, Yanhui Hu, Norbert Perrimon
The paper identifies Zrf1 as an epigenetic factor regulating intestinal stem cell proliferation and genome stability in Drosophila midgut regeneration.
PLoS Genetics · Oct 27, 2025Peer-reviewedGenetics
Zhiliang Zhang, Jijin Zhang, Lipeng Kang, Xuebing Qiu, Song Xu, Jun Qiang Xu, Yafei Guo, Zelin Niu, Beirui Niu, Aoyue Bi, Xuebo Zhao, Daxing Xu, Jing Wang, Changbin Yin, Fei Lü
This study evaluates SV detection methods using HiFi sequencing in wheat, finding optimal aligners and callers and demonstrating low-coverage HiFi sequencing is sufficient for accurate SV discovery.
The Plant Journal · Sep 6, 2024Peer-reviewedGenomics
Shivesh Chaudhary, Sivaramakrishnan Sankarapandian, Matt Sooknah, Joy Pai, Caroline McCue, Zhenghao Chen, Jun Qiang Xu
Baikal improves fluorescence microscopy image denoising using diffusion models without requiring paired noisy and clean images.
Lecture notes in computer science · Jan 1, 2024Peer-reviewedBioinformatics
Ben Ewen‐Campen, Haojiang Luan, Jun Qiang Xu, Rohit Singh, Neha Joshi, Tanuj Thakkar, Bonnie Berger, Benjamin H. White, Norbert Perrimon
This paper introduces a new split-Gal4 system based on a self-excising split-intein that is fully repressible by Gal80, enabling temporal control of genetic labeling in Drosophila.
bioRxiv · Mar 24, 2023 · PreprintGenetics
Rohit Singh, Joshua Shing Shun Li, Sudhir Gopal Tattikota, Yifang Liu, Jun Qiang Xu, Yanhui Hu, Norbert Perrimon, Bonnie Berger
This paper introduces Haystack, a method to prioritize causal transcription factors from single-cell data, validated in Drosophila, showing high accuracy in identifying drivers of differentiation.
bioRxiv · Jun 27, 2022 · PreprintBioinformatics
Jun Qiang Xu, Ah‐Ram Kim, Ross W. Cheloha, Fabian A. Fischer, Joshua Shing Shun Li, Yuan Feng, Emily Stoneburner, Richard C. Binari, Stephanie Elizabeth Mohr, Jonathan D. Zirin, Hidde L. Ploegh, Norbert Perrimon
The paper introduces two short NanoTag epitopes and their nanobodies for in vivo protein visualization and manipulation in Drosophila, demonstrating their utility in multiple assays and CRISPR-based tagging.
eLife · Jan 25, 2022Peer-reviewedGenetics
Jun Qiang Xu, Yifang Liu, Hongjie Li, Alexander J. Tarashansky, Colin H. Kalicki, Ruei‐Jiun Hung, Yanhui Hu, Aram Comjean, Sai Saroja Kolluru, Bo Wang, Stephen R. Quake, Liqun Luo, Andrew P. McMahon, Julian A. T. Dow, Norbert Perrimon
The paper characterizes cell types in the fly kidney using snRNA-seq and identifies new clusters, markers, and signaling networks, linking them to mammalian and planarian kidney structures.
bioRxiv · Sep 3, 2021 · PreprintDevelopmental Biology
Jun Qiang Xu, Wei Liu, Dehong Yang, Shuqing Chen, Kai Chen, Zulian Liu, Yang Xu, Jing Meng, Guan‐Heng Zhu, Shuanglin Dong, Yong Zhang, Shuai Zhan, Guirong Wang, Yongping Huang
The paper identifies two genetic pathways in silkworms that regulate olfactory-based sexual behaviors through specific pheromone perception genes.
PLoS Genetics · Jun 10, 2020Peer-reviewedGenetics