Vincent C. T. Hanlon

Diversity at the HYP1 locus in potato cyst nematodes does not result from developmentally-programmed somatic mutations

The paper investigates whether diversity at the HYP1 locus in potato cyst nematodes arises from developmental editing or sequencing errors, concluding it is due to evolutionary forces.

3D printing and deep learning enable holistic and dynamic analyses of tens of thousands of parasites infecting hundreds of genotypes

This study uses 3D printing and deep learning to analyze parasite dynamics across hundreds of plant genotypes, identifying host genetic control of parasite traits and new QTLs.

The host range paradox of Meloidogyne incognita: a physiological and transcriptomic analysis of nine susceptible interactions across six plant orders

This paper investigates how Meloidogyne incognita infects diverse plant species by analyzing transcriptomic responses across nine plant interactions, finding distinct transcriptional programs and effector deployment patterns that influence host specificity.

A familial, telomere-to-telomere reference for human de novo mutation and recombination from a four-generation pedigree

The paper uses a four-generation family to systematically assess de novo mutations and recombination, finding high mutation rates and paternal bias, along with a detailed recombination map.

Parent-of-origin detection and chromosome-scale haplotyping using long-read DNA methylation sequencing and Strand-seq

This paper uses long-read DNA methylation sequencing and Strand-seq to detect parent-of-origin and haplotype chromosomes, achieving high accuracy in five trios.

Benchmarking challenging small variants with linked and long reads

This paper expands genome benchmarking to include difficult-to-map regions using linked and long reads, identifying more false negatives in variant calling.