Author

Medhat Mahmoud

Baylor College of Medicine

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Biology Disciplines

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Bioinformatics· 1 Genomics· 1

Signature Assays, Organisms & Methods

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Organism:human· 2 Assay:whole-genome sequencing· 2 Approach:benchmark study· 1 Research Focus:benchmarking· 1 Approach:experimental assay· 1 Research Focus:genome assembly· 1 Approach:statistical model· 1 Research Focus:variant calling· 1

Frequent Co-Authors

Andrew W. CarrolliD· 2 shared Arkarachai FungtammasaniD· 2 shared Chen-Shan ChiniD· 2 shared Fritz Joachim SedlazeckiD· 2 shared Justin M. ZookiD· 2 shared Tobias MarschalliD· 2 shared Aaron M. WengeriD· 1 shared Álvaro Martínez BarrioiD· 1 shared

Activity by Year

2020-2022 · peak 1/yr

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10 top collaborators · 42 mutual co-author links

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2 shared papersGenomics

Andrew W. CarrollORCID

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2 papers

Recent·Most cited

Benchmarking challenging small variants with linked and long reads

Justin Wagner, Nathan D. Olson, Lindsay N. Harris, Jennifer McDaniel, Ziad Khan, Jesse Farek, Medhat Mahmoud, Ana Stankovic, Vladimir Kovacevic, Byunggil Yoo, Neil Miller, Jeffrey Rosenfeld, Bohan Ni, Samantha Zarate, Melanie Kirsche, , Justin M. Zook

This paper expands genome benchmarking to include difficult-to-map regions using linked and long reads, identifying more false negatives in variant calling.

Cell Genomics · Apr 28, 2022Peer-reviewedGenomics

Accurate chromosome-scale haplotype-resolved assembly of human genomes

Shilpa Garg, Arkarachai Fungtammasan, Andrew W. Carroll, Mike Chou, Anthony Schmitt, Xiang Zhou, Stephen Mac, Paul Peluso, Emily Hatas, Jay Ghurye, Jared Maguire, Medhat Mahmoud, Haoyu Cheng, David Heller, Justin M. Zook, , Heng Li

This paper introduces a method for chromosome-scale haplotype-resolved genome assembly using long reads and long-range data, achieving high accuracy and contiguity in three human genomes.

bioRxiv · Jul 1, 2020 · PreprintBioinformatics