Aïda Ouangraoua

Non-canonical altPIDD1 protein: unveiling the true major translational output of the PIDD1 gene

The paper identifies altPIDD1 as the primary protein product of the PIDD1 gene, showing higher expression and cytoskeletal interactions compared to the known PIDD1 protein.

Motif selection enables efficient sequence-based classification of non-coding RNA

The paper introduces a sequence-based method for classifying non-coding RNAs using motif selection, achieving comparable accuracy to structure-based methods with significantly reduced computation time.

Choosing representative proteins based on splicing structure similarity improves the accuracy of gene tree reconstruction

This work introduces a method to improve gene tree accuracy by selecting representative transcripts based on splicing structure similarity, showing better results than current approaches.

SplicedFamAlign: CDS-to-gene spliced alignment and identification of transcript orthology groups

SplicedFamAlign improves CDS-to-gene spliced alignment by incorporating splicing structures, enhancing accuracy and efficiency for transcript orthology group identification.