Author

Jason Bennett

La Jolla Institute for ImmunologyORCID 0000-0002-2087-0009Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 1 Systems Biology· 1

Signature Assays, Organisms & Methods

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Assay:bulk RNA-seq· 1 Research Focus:database / resource· 1 Approach:deep learning· 1 Research Focus:differential expression· 1 Organism:human· 1 Assay:proteomics· 1 Approach:statistical model· 1 Approach:transformer / foundation model· 1

Frequent Co-Authors

Alessandro SetteiD· 2 shared Bjoern PetersiD· 2 shared Adrienne P. Gilkes· 1 shared Aishwarya MandavaiD· 1 shared Bali PulendraniD· 1 shared Blake Harlan· 1 shared Christopher D. PetroiD· 1 shared Daniel MarramaiD· 1 shared

Activity by Year

2021-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 30 mutual co-author links

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2 shared papersBioinformatics

Alessandro SetteORCID

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2 papers

Recent·Most cited

BioinformaticsbioRxivPreprintJan 9, 2026

Curation at Scale with EPITOME: Extraction Pipeline for Immunological Texts and Open-Source Multimodal Enquiry

Eve Richardson, Parker Lischwe, Jason Bennett…·Bjoern Peters

EPITOME is a multimodal pipeline that combines OCR, text matching, and VLMs to automate and enhance epitope data curation from scientific papers.

DOI 10.64898/2026.01.08.698331

deep learningtransformer / foundation model

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Systems BiologyJCI InsightPeer-reviewedMar 9, 2021

A system-view of B. pertussis booster vaccine responses in adults primed with whole-cell vs. acellular vaccine in infancy

Ricardo da Silva Antunes, Mikhail Pomaznoy, Ferran Soldevila…·Bjoern Peters

The paper compares immune responses to a Tdap booster in adults primed with acellular (aP) or whole-cell (wP) pertussis vaccines, identifying divergent gene expression and antibody subtype patterns in aP-primed individuals.

21 citations

humanproteomics

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