Jeanne Got

Integrating metagenome-scale metabolic modelling and metabolomics to identify biochemical interactions in Microcystis phycospheres

The paper integrates metagenome-scale metabolic modeling and metabolomics to analyze Microcystis phycospheres, revealing metabolic interactions and functional differences among strains.

Evolutionary genomics of the emergence of brown algae as key components of coastal ecosystems

This study analyzes 60 brown algal genomes to identify genomic innovations and evolutionary patterns that enabled their adaptation to coastal ecosystems.

Dynamic genome-based metabolic modeling of the predominant cellulolytic rumen bacterium Fibrobacter succinogenes S85

The paper develops dynamic metabolic models of F. succinogenes S85 using genome data and metabolic network reconstruction to simulate carbohydrate metabolism and metabolite production.

AuCoMe: inferring and comparing metabolisms across heterogeneous sets of annotated genomes

AuCoMe reduces technical biases in metabolic network comparisons across diverse genomes and identifies shared and divergent metabolic traits.

Estimating consensus proteomes and metabolic functions from taxonomic affiliations

EsMeCaTa estimates consensus proteomes and metabolic functions from taxonomic data, validated on environmental datasets and applied to a methanogenic reactor study.