scprocess: a pipeline for processing, integrating and visualising atlas-scale single cell data
Maruša Koderman, Julia Pilarski, Erica Bianco, Danilo González, Mark D. Robinson, Will Macnair
scprocess is a Snakemake pipeline that automates and integrates single cell RNA sequencing data processing, enabling reproducible and scalable analysis of large datasets.
bioRxiv · Mar 13, 2026 · PreprintBioinformatics