Julia Pilarski

This paper evaluates the accuracy of inferring cell phylogenies and population dynamics from CRISPR lineage recordings using simulations and Bayesian methods.

scprocess is a Snakemake pipeline that automates and integrates single cell RNA sequencing data processing, enabling reproducible and scalable analysis of large datasets.

The paper extends phylodynamic models to account for age-dependent cell division in developmental biology, showing biases in previous estimates using birth-death models and providing a BEAST2 implementation.