Author

Steven J. Clipman

Johns Hopkins UniversityORCID 0000-0002-2366-8420Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

Click to filter author papers

Bioinformatics· 1 Genetics· 1 Genomics· 1

Signature Assays, Organisms & Methods

Click to filter · or open tag

Approach:statistical model· 2 Organism:virus· 2 Research Focus:database / resource· 1 Research Focus:gene regulatory network inference· 1 Approach:graph neural network· 1 Organism:human· 1 Assay:metagenomics· 1 Assay:proteomics· 1

Frequent Co-Authors

Dylan DucheniD· 2 shared Priya DuggaliD· 2 shared Abraham Joseph KandathiliD· 1 shared Ana ValenciaiD· 1 shared Candelaria VergaraiD· 1 shared Chloe L. ThioiD· 1 shared Cristian ValenciaiD· 1 shared David L. ThomasiD· 1 shared

Activity by Year

2021-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 21 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

2 shared papersBioinformatics

Dylan DuchenORCID

Mutual co-authors in cluster

Author profile →

3 papers

Recent·Most cited

BioinformaticsbioRxivPreprintOct 30, 2026

Assembly of minimally fragmented metagenomic pangenome graphs

Dylan Duchen, Florencia Martino, Kakhangchung Panmei…·Steven J. Clipman

The paper introduces PANIMaSTA, a method to construct minimally fragmented metagenomic pangenome graphs for highly diverse viral genomes, improving graph topology for comparative analysis.

DOI 10.64898/2026.10.29.762972

virusmetagenomics

𝕏 PostBluesky

GenomicsPLoS ONEPeer-reviewedApr 26, 2024

A hepatitis B virus (HBV) sequence variation graph improves sequence alignment and sample-specific consensus sequence construction for genetic analysis of HBV

Dylan Duchen, Steven J. Clipman, Candelaria Vergara…·Genevieve L. Wojcik

This paper shows that using a genome graph instead of a linear reference improves HBV sequence alignment and sample-specific consensus sequence construction.

4 citations

viruswhole-genome sequencing

𝕏 PostBluesky

GeneticsbioRxivPreprintMar 25, 2021

Antiviral Antibody Epitope Selection is a Heritable Trait

Thiagarajan Venkataraman, Cristian Valencia, Massimo Mangino…·H. Benjamin Larman

The paper identifies heritable antibody epitopes and genetic loci associated with EBV immune responses and viral load control using twin and SNP-genotyped data.

7 citations

humanproteomics

𝕏 PostBluesky