Author

Amy S. Tsai

Stanford MedicineORCID 0000-0002-2380-6424Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Research Focus:differential expression· 2 Organism:human· 2 Research Focus:benchmarking· 1 Assay:bulk RNA-seq· 1 Research Focus:cell type annotation· 1 Research Focus:cell-cell communication· 1 Approach:deep learning· 1 Research Focus:drug response / drug discovery· 1

Frequent Co-Authors

Brice L GaudilliereiD· 2 shared David K. StevensoniD· 2 shared Dyani Kalea GaudilliereiD· 2 shared Edward A. GanioiD· 2 shared Gary Michael ShawiD· 2 shared Ina Annelies StelzeriD· 2 shared Kazuo AndoiD· 2 shared Nima AghaeepouriD· 2 shared

Activity by Year

2020-2025 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 44 mutual co-author links

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2 shared papersImmunology

Brice L GaudilliereORCID

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2 papers

Recent·Most cited

Single-cell-level digital twins for preterm birth prevention strategies

Jakob F. Einhaus, Peter Neidlinger, Olivier Fondeur, Sato Masaki, Alexandra Anronikov, Kotaro Miyazaki, Jonas N. Amar, Kazuo Ando, Valentin Badea, Dyani Kalea Gaudilliere, Maximilian Sabayev, Dorien Feyaerts, Maïgane Diop, Amy S. Tsai, Amélie I. F. Cambriel, , Brice L Gaudilliere

The paper introduces SIMCO, a single-cell digital twin framework for evaluating PTL prevention drugs, identifying tetrahydrofolate, maprotiline, and aspirin-lansoprazole as top candidates.

bioRxiv · Sep 29, 2025 · PreprintImmunology

Integration of Mechanistic Immunological Knowledge into a Machine Learning Pipeline Increases Predictive Power

Anthony Culos, Amy S. Tsai, Natalie Stanley, Martin Becker, Mohammad Sajjad Ghaemi, David R. McIlwain, Ramin Fallahzadeh, Athena Tanada, Huda Nassar, Edward A. Ganio, Laura S. Peterson, Xiaoyuan Han, Ina Annelies Stelzer, Kazuo Ando, Dyani Kalea Gaudilliere, , Nima Aghaeepour

The paper introduces a machine learning method that integrates immunological knowledge to improve predictive power from mass cytometry data.

bioRxiv · Feb 26, 2020 · PreprintBioinformatics