Author

Alexander Junge

University of CopenhagenORCID 0000-0002-2410-9671Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Approach:statistical model· 2 Research Focus:benchmarking· 1 Research Focus:database / resource· 1 Approach:experimental assay· 1 Assay:GWAS summary statistics· 1 Research Focus:software / tool· 1

Frequent Co-Authors

Lars Juhl JenseniD· 2 shared Adam Caprez· 1 shared Alex ReynoldsiD· 1 shared Andreas SjödiniD· 1 shared Anthony BretaudeauiD· 1 shared Arne Kratz· 1 shared Ayman Yousif· 1 shared Bérénice BatutiD· 1 shared

Activity by Year

2018-2022 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 36 mutual co-author links

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2 shared papersBioinformatics

Lars Juhl JensenORCID

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3 papers

Recent·Most cited

DISEASES 2.0: a weekly updated database of disease-gene associations from text mining and data integration

Dhouha Grissa, Alexander Junge, Tudor Ionel Oprea, Lars Juhl Jensen

DISEASES 2.0 updates a disease-gene association database by integrating text mining, curated data, and GWAS, increasing text-mined associations by 9-fold.

Database · Jan 1, 2022Peer-reviewedBioinformatics

CoCoScore: Context-aware co-occurrence scoring for text mining applications using distant supervision

Alexander Junge, Lars Juhl Jensen

CoCoScore improves relation extraction by scoring co-occurrence with contextual awareness, outperforming existing methods in disease-gene, tissue-gene, and protein-protein association identification.

Bioinformatics · Jun 10, 2019Peer-reviewedBioinformatics

Bioconda: A sustainable and comprehensive software distribution for the life sciences

Björn Grüning, Ryan Dale, Andreas Sjödin, Brad Chapman, Jillian Rowe, Christopher H. Tomkins-Tinch, Renan Valieris, Adam Caprez, Bérénice Batut, Mathias Haudgaard, Thomas Cokelaer, Kyle A. Beauchamp, Brent S. Pedersen, Youri Hoogstrate, Anthony Bretaudeau, , Matthew L. Workentine

Bioconda provides a sustainable, comprehensive distribution of bioinformatics software using Conda for reproducible analysis across platforms.

Nature Methods · Jun 25, 2018Peer-reviewedBioinformatics