Gabriel Moreno‐Hagelsieb

The paper investigates the phylogenetic correlation between HIP1 and Type IV Secretion System proteins in cyanobacteria, suggesting HIP1 facilitates horizontal gene transfer.

The paper shows that strain-specific higher-order interactions in microbial communities can override phylogenetic conservatism, demonstrating that strains are not interchangeable even within the same species.

AnnoView provides a web tool for exploring and comparing gene neighborhoods across microbial genomes, supporting both large databases and user-uploaded datasets.

The paper uses predicted 3D structures to identify transcription factors in the Escherichia coli pangenome, finding that structural comparisons extend homology inferences beyond sequence-based methods.

The paper compares sketching methods to ANI for species delimitation in Enterobacterales genomes, finding fast estimates as accurate as ANI.

The paper compares ANI, Mash, and Dashing for classifying Klebsiella genomes, finding they equally distinguish species with high accuracy.

The paper compares the performance of three fast protein sequence comparison tools for finding reciprocal best hits in prokaryotic genomes and finds diamond with the 'sensitive' option to be the best balance of speed and accuracy.