Author

Joshua Fry

Northwestern UniversityORCID 0000-0002-2503-611XUnclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Assay:long-read sequencing· 2 Research Focus:benchmarking· 1 Assay:bulk RNA-seq· 1 Research Focus:database / resource· 1 Research Focus:differential expression· 1 Approach:experimental assay· 1 Research Focus:gene regulatory network inference· 1 Research Focus:software / tool· 1

Frequent Co-Authors

Rendong YangiD· 2 shared Richard A SchäferiD· 1 shared Yangyang LiiD· 1 shared Yangyang LiiD· 1 shared

Activity by Year

2022-2026 · peak 1/yr

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4 top collaborators · 4 mutual co-author links

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2 shared papersBioinformatics

Rendong YangORCID

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2 papers

Recent·Most cited

BioinformaticsbioRxivPreprintJul 5, 2026

Analysis of isoform complexity in pan-transcriptome graphs with atroplex

Richard A Schäfer, Yangyang Li, Joshua Fry, Rendong Yang

This paper introduces atroplex, a framework for indexing and comparing isoform complexity across pan-transcriptomes, enabling cross-cohort structural analysis of alternative splicing.

DOI 10.64898/2026.06.30.735696

long-read sequencingexperimental assay

𝕏 PostBluesky

BioinformaticsBioinformaticsPeer-reviewedSep 12, 2022

ScanExitronLR: characterization and quantification of exitron splicing events in long-read RNA-seq data

Joshua Fry, Yangyang Li, Rendong Yang

ScanExitronLR identifies and quantifies exitron splicing events in long-read RNA-seq data, outperforming short-read tools on noisy data.

6 citations

long-read sequencingbulk RNA-seq

𝕏 PostBluesky