Yangyang Li

This paper introduces atroplex, a framework for indexing and comparing isoform complexity across pan-transcriptomes, enabling cross-cohort structural analysis of alternative splicing.

OctopusV and TentacleSV provide a toolkit for multi-sample, cross-platform structural variant analysis, improving precision and consistency in cancer genomics and rare disease diagnostics.

Deep-Chopper detects and removes adapter sequences from nanopore dRNA-seq reads, improving transcriptome analysis accuracy.