Author

Jeff Gauthier

Université LavalORCID 0000-0002-2523-2698Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 2 Genetics· 1 Microbiology· 1

Signature Assays, Organisms & Methods

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Organism:bacteria (other)· 2 Approach:experimental assay· 2 Assay:whole-genome sequencing· 2 Research Focus:benchmarking· 1 Research Focus:gene regulatory network inference· 1 Research Focus:host-pathogen & immune response· 1 Approach:machine learning (classical)· 1 Research Focus:software / tool· 1

Frequent Co-Authors

Roger C. LévesqueiD· 3 shared Amanda D. RoeiD· 1 shared Antony T. VincentiD· 1 shared Brian BoyleiD· 1 shared Éric DézieliD· 1 shared Irena Kukavica‐IbruljiD· 1 shared Karin R. L. van der BurgiD· 1 shared Katie Elizabeth MarshalliD· 1 shared

Activity by Year

2020-2025 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 22 mutual co-author links

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3 shared papersBioinformatics

Roger C. LévesqueORCID

Mutual co-authors in cluster

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4 papers

Recent·Most cited

BioinformaticsBioinformaticsPeer-reviewedAug 21, 2025

PDP-Miner: an AI/ML tool to detect prophage tail proteins with depolymerase domains across thousands of bacterial genomes

Jeff Gauthier, Irena Kukavica‐Ibrulj, Roger C. Lévesque

3 citations

bacteria (other)whole-genome sequencing

𝕏 PostBluesky

MicrobiologybioRxivPreprintMay 16, 2025

PqsE is conserved and functionally relevant in Pseudomonas aeruginosa

Mylène C. Trottier, Marie‐Christine Groleau, Jeff Gauthier…·Éric Déziel

This study confirms that PqsE is conserved and functionally relevant across diverse Pseudomonas aeruginosa strains, highlighting its role in quorum sensing and virulence.

DOI 10.1101/2025.05.16.654539

bacteria (other)experimental assay

𝕏 PostBluesky

GeneticsbioRxivPreprintNov 20, 2024

Major changes in gene expression between strains of diapausing and non-diapause spruce budworm despite little evidence of genetic divergence

Karin R. L. van der Burg, Jeff Gauthier, Amanda D. Roe…·Katie Elizabeth Marshall

1 citation

whole-genome sequencingexperimental assay

𝕏 PostBluesky

BioinformaticsbioRxivPreprintSep 23, 2020

Evenness-richness scatter plots: a graphical, intuitive approach to alpha diversity analysis

Jeff Gauthier, Nicolas Derôme

The paper introduces evenness-richness scatter plots to visualize and compare alpha diversity by decoupling richness and evenness components of Shannon's index, enabling statistical analysis of community differences.

2 citations

statistical modelbenchmarking

𝕏 PostBluesky