Xiao Ling Luo

HERO improves error correction in long reads by combining de Bruijn and overlap graphs, reducing indel and mismatch errors by 65% and 20% respectively.

VeChat corrects errors in long-read sequencing data by using variation graphs instead of sequence-based consensus, reducing errors in PacBio and ONT reads compared to existing methods.

StrainXpress improves strain-aware metagenome assembly by reconstructing strain-specific genomes from short reads, outperforming existing methods in coverage and accuracy.

This paper introduces phasebook, a method for haplotype-aware diploid genome assembly from long reads, showing improved haplotype coverage compared to existing methods.

OGRE clusters metagenomic reads into species-specific bins efficiently for large datasets without computational limitations.