Author

Xiaoyun Yang

Shandong UniversityORCID 0000-0002-2569-3048Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Assay:proteomics· 2 Organism:bacteria (other)· 1 Approach:deep learning· 1 Approach:experimental assay· 1 Assay:imaging· 1 Approach:large language model· 1 Organism:multiple species· 1 Research Focus:protein design· 1

Frequent Co-Authors

Boyao WaniD· 1 shared Chuanlun ZhangiD· 1 shared Guanqi CheniD· 1 shared Guoping ZhaoiD· 1 shared Haifan GongiD· 1 shared Hongpo DongiD· 1 shared Jiaxin CheniD· 1 shared Jinghui ZhangiD· 1 shared

Activity by Year

2025-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 21 mutual co-author links

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1 shared paperBioinformatics

Boyao WanORCID

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2 papers

Recent·Most cited

Molecular BiologybioRxivPreprintSep 1, 2026

✦ In-depth digest

Structural basis for catalytic and inhibitory divergence between archaeal and bacterial ammonia monooxygenases

Xiaoyun Yang, Tieqiang Mao, Zhi-Cong He…·Zongqiang Li

Archaeal ammonia monooxygenase (AMO) is a cup-shaped homotrimer using a mononuclear CuD site; inhibitors bind bacterial AMO's dicopper center directly but apparently inactivate archaeal AMO indirectly by relocating copper.

1 citation

multiple speciesbacteria (other)

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BioinformaticsbioRxivPreprintApr 29, 2025

PepSeek: Universal Functional Peptide Discovery with Cooperation Between Specialized Deep Learning Models and Large Language Model

Haifan Gong, Yue Wang, Qingzhou Kong…·Yanqing Li

PepSeek identifies functional peptides using a combination of large language models and specialized models, achieving high accuracy in antimicrobial peptide discovery.

1 citation

proteomicslarge language model

𝕏 PostBluesky