Ana T. Duggan

This paper introduces MeaSeq, an open-source pipeline for analyzing measles virus whole genome sequences, demonstrating its accuracy and utility for genomic surveillance.

This paper introduces squirrel, a tool for analyzing MPXV genomes to detect outbreaks and classify APOBEC3 mutations, aiding public health responses.

The paper identifies contamination thresholds for Nanopore-generated SARS-CoV-2 sequences through in silico analysis to ensure reliable lineage calls and genomic integrity.

The paper identifies ancient Clostridium tetani genomes and TeNT variants from archaeological remains, revealing new species and a pathogenic toxin variant.