Author

Yukio Kawahara

Institute for Open and Transdisciplinary Research InitiativesORCID 0000-0002-2629-9405Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Molecular Biology· 3 Bioinformatics· 1

Signature Assays, Organisms & Methods

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Research Focus:differential expression· 3 Approach:experimental assay· 3 Research Focus:gene regulatory network inference· 2 Organism:human· 2 Organism:mouse· 2 Assay:multiome· 2 Approach:statistical model· 2 Assay:bulk RNA-seq· 1

Frequent Co-Authors

Yuki KatoiD· 3 shared Taisuke NakahamaiD· 2 shared Toshiharu ShibuyaiD· 2 shared Akila MayedaiD· 1 shared Fumito Hori· 1 shared Hanae Yoshioka· 1 shared Hideo MatsudaiD· 1 shared Hiroyuki TodoiD· 1 shared

Activity by Year

2020-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 20 mutual co-author links

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3 shared papersMolecular Biology

Yuki KatoORCID

Mutual co-authors in cluster

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4 papers

Recent·Most cited

Two closely related RNA helicases, UAP56 and URH49, couple mRNA splicing and export pathways with their distinct complexes

Ken‐ichi Fujita, Kotaro Harada, Yuya Ikeda, Hanae Yoshioka, Moe Yokoshi, Fumito Hori, Naoko Fujiwara, Shigeto Seno, Hideo Matsuda, Yukio Kawahara, Akila Mayeda, Seiji Masuda

This study identifies three splicing regulation patterns mediated by UAP56 and URH49 and their association with mRNA export pathways.

bioRxiv · Oct 29, 2026 · PreprintMolecular Biology

RNA editing of AZIN1 coding sites is catalyzed by ADAR1 p150 after splicing

Yanfang Xing, Taisuke Nakahama, Yuke Wu, Maal Inoue, Jung In Kim, Hiroyuki Todo, Toshiharu Shibuya, Yuki Kato, Yukio Kawahara

The paper shows that ADAR1 p150, not p110 or p150, edits AZIN1 coding sites after splicing in mouse and human cells.

Journal of Biological Chemistry · May 18, 2023Peer-reviewedMolecular Biology

Alignment of time-course single-cell RNA-seq data with CAPITAL

Reiichi Sugihara, Yuki Kato, Tomoya Mori, Yukio Kawahara

The paper introduces CAPITAL, a method for comparing non-linear pseudotime trajectories in time-course single-cell RNA-seq data, enabling unbiased analysis of gene expression dynamics.

Nature Communications · Oct 14, 2022Peer-reviewedBioinformatics

A comparative analysis among ADAR mutant mice reveals site-specific regulation of RNA editing

Pedro Henrique Costa Cruz, Yuki Kato, Taisuke Nakahama, Toshiharu Shibuya, Yukio Kawahara

The paper compares RNA editing in ADAR mutant mice to determine site-specific regulation by ADAR1 and ADAR2.

RNA · Jan 15, 2020Peer-reviewedMolecular Biology