Author

Karin Yanagi

Tufts UniversityORCID 0000-0002-2630-880XUnclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 1

Signature Assays, Organisms & Methods

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Research Focus:benchmarking· 1 Approach:deep learning· 1 Assay:protein sequence· 1

Frequent Co-Authors

David Lee KaplaniD· 1 shared Jugal Kishore SahooiD· 1 shared Kyongbum LeeiD· 1 shared Lenore CoweniD· 1 shared Mert ErdeniD· 1 shared Tyler J. SchultiD· 1 shared

Activity by Year

2026-2026 · peak 1/yr

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6 top collaborators · 15 mutual co-author links

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1 shared paperBioinformatics

David Lee KaplanORCID

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1 paper

Recent·Most cited

BioinformaticsPLoS Computational BiologyPeer-reviewedSep 25, 2026

Fast structural search for classification of gut bacterial mucin O-glycan degrading enzymes

Mert Erden, Tyler J. Schult, Karin Yanagi…·Kyongbum Lee

This paper introduces DEFT, a method that combines sequence- and structure-based approaches to improve EC number prediction accuracy and enable high-throughput enzyme repertoire annotation.

DOI 10.1371/journal.pcbi.1014034

protein sequencedeep learning

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