Author

Kyongbum Lee

Tufts UniversityORCID 0000-0002-0699-8057Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

Click to filter author papers

Bioengineering· 1 Bioinformatics· 1 Synthetic Biology· 1

Signature Assays, Organisms & Methods

Click to filter · or open tag

Research Focus:cell-cell communication· 2 Approach:experimental assay· 2 Research Focus:benchmarking· 1 Research Focus:cell type annotation· 1 Research Focus:clustering· 1 Approach:deep learning· 1 Research Focus:differential expression· 1 Assay:protein sequence· 1

Frequent Co-Authors

David Lee KaplaniD· 2 shared Nikhil U. NairiD· 2 shared Aaron D. OlawoyiniD· 1 shared Damayanti Chakravarty· 1 shared James A. Van DeventeriD· 1 shared James DolginiD· 1 shared Joseph E. Balkan· 1 shared Jugal Kishore SahooiD· 1 shared

Activity by Year

2022-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 22 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

2 shared papersBioinformatics

David Lee KaplanORCID

Mutual co-authors in cluster

Author profile →

3 papers

Recent·Most cited

Fast structural search for classification of gut bacterial mucin O-glycan degrading enzymes

Mert Erden, Tyler J. Schult, Karin Yanagi, Jugal Kishore Sahoo, David Lee Kaplan, Lenore Cowen, Kyongbum Lee

This paper introduces DEFT, a method that combines sequence- and structure-based approaches to improve EC number prediction accuracy and enable high-throughput enzyme repertoire annotation.

PLoS Computational Biology · Sep 25, 2026Peer-reviewedBioinformatics

Microbial lysates as low-cost serum replacements in cellular agriculture media formulation

James Dolgin, Damayanti Chakravarty, Sean F. Sullivan, Yiming Cai, Taehwan Lim, Pomaikaimaikalani Yamaguchi, Joseph E. Balkan, Licheng Xu, Aaron D. Olawoyin, Kyongbum Lee, David Lee Kaplan, Nikhil U. Nair

This study identifies microbial lysates as a low-cost alternative to fetal bovine serum for cultivating meat cells in vitro.

Food Research International · Nov 2, 2024Peer-reviewedBioengineering

Flow Cytometric Evaluation of Yeast-Bacterial Cell-Cell Interactions

Ming Lei, Vikas D. Trivedi, Nikhil U. Nair, Kyongbum Lee, James A. Van Deventer

The paper evaluates yeast-bacterial cell-cell interactions using flow cytometry and FACS to characterize nanobody-antigen binding.

Biotechnology and Bioengineering · Oct 19, 2022Peer-reviewedSynthetic Biology