Author

Jonathan E. Schmitz

Vanderbilt UniversityORCID 0000-0002-2727-9078Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Assay:whole-genome sequencing· 2 Research Focus:benchmarking· 1 Assay:bulk RNA-seq· 1 Assay:DNA methylation· 1 Approach:experimental assay· 1 Research Focus:genome assembly· 1 Research Focus:host-pathogen & immune response· 1 Organism:human· 1

Frequent Co-Authors

Maria HadjifrangiskouiD· 2 shared Abigail Leavitt LaBellaiD· 1 shared Alexandra N. Borden· 1 shared Antonis RokasiD· 1 shared Brendan T. FraineyiD· 1 shared Carl B W Soderstrom· 1 shared Carla GonçalvesiD· 1 shared Christina M. Chavez· 1 shared

Activity by Year

2022-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 25 mutual co-author links

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2 shared papersMicrobiology

Maria HadjifrangiskouORCID

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2 papers

Recent·Most cited

Unmasking Pathogen Traits for Chronic Colonization in Neurogenic Bladder Patients

Seth A. Reasoner, Brendan T. Frainey, Owen F. Hale, Alexandra N. Borden, M. Kyle Graham, Elise Turner, Lucas R. Brenes, Carl B W Soderstrom, Hamilton Green, Jonathan E. Schmitz, Michael T. Laub, Maryellen S. Kelly, Douglass B. Clayton, Maria Hadjifrangiskou

The paper studies microbial colonization in neurogenic bladder patients, identifying patterns of bacterial persistence and mutations linked to immune evasion and phage resistance.

Cell Reports · Apr 22, 2026Peer-reviewedMicrobiology

BioKIT: a versatile toolkit for processing and analyzing diverse types of sequence data

Jacob Lucas Steenwyk, Thomas J. Buida, Carla Gonçalves, Dayna Goltz, Grace H Morales, Matthew E. Mead, Abigail Leavitt LaBella, Christina M. Chavez, Jonathan E. Schmitz, Maria Hadjifrangiskou, Yuanning Li, Antonis Rokas

BioKIT provides a unified toolkit for processing and analyzing diverse sequence data, demonstrating its utility through quality assessments and codon usage analysis across multiple datasets.

Genetics · May 10, 2022Peer-reviewedBioinformatics