Pengshuo Yang

The paper improves protein structure prediction by linking microbiome sequences to protein families using a targeted approach with predicted biomes.

QC-Blind removes contaminants from bacterial DNA sequencing data without a reference genome, preserving target species genomic information with high specificity and accuracy.

The paper analyzes marine antibiotic resistance genes (ARGs) and their associations with bacterial communities using Tara Oceans metagenomic data, finding higher ARG abundance and diversity in mesopelagic zones and ARG-enriched genera being more abundant than their ARG-less counterparts.