Author

Christopher Batten

Cornell UniversityORCID 0000-0002-2835-667XUnclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 1 Scientific Communication & Education· 1

Signature Assays, Organisms & Methods

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Research Focus:benchmarking· 2 Research Focus:software / tool· 2 Approach:statistical model· 2 Approach:benchmark study· 1 Research Focus:database / resource· 1 Research Focus:dimensionality reduction· 1 Approach:graph neural network· 1 Organism:human· 1

Frequent Co-Authors

Andrea GuarracinoiD· 2 shared Adrian Kibet· 1 shared Alexander Kabui· 1 shared Arun IsaaciD· 1 shared Brian Muhia· 1 shared David George AshbrookiD· 1 shared Erik P. GarrisoniD· 1 shared Felix LissoiD· 1 shared

Activity by Year

2025-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

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2 shared papersBioinformatics

Andrea GuarracinoORCID

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2 papers

Recent·Most cited

Panomap: Unbiased Nanopore Signal Mapping with Pangenome Variation Graphs

Po Jui Shih, Zephan Sanghani, Andrea Guarracino, Hasindu Gamaarachchi, Christopher Batten

Panomap maps raw nanopore signals to pangenome variation graphs, improving mapping accuracy and reducing reference bias compared to linear-reference methods.

bioRxiv · Jul 21, 2026 · PreprintBioinformatics

Creating a biomedical knowledge base by addressing GPT inaccurate responses and benchmarking context

Shelby S. Darnell, Rupert W. Overall, Andrea Guarracino, Vicenza Colonna, Flavia Villani, Erik P. Garrison, Arun Isaac, Priscilla Muli, Muriithi Frederick Muriuki, Alexander Kabui, Munyoki Kilyungi, Felix Lisso, Adrian Kibet, Brian Muhia, Harm Nijveen, , Pjotr Prins

GNQA, a retrieval-augmented GPT question-answering system over 3000 GeneNetwork, aging and diabetes papers, cites source paragraphs; RAGAS rated answer relevance above human thumbs-up ratings (89% vs 76%).

Open Research Africa · Sep 2, 2025Peer-reviewedScientific Communication & Education✦ In-depth digest