Harm Nijveen

SeedMatExplorer: The transcriptome atlas of Arabidopsis seed maturation

The paper generates a high-resolution transcriptome atlas of Arabidopsis seed maturation and links gene expression to seed quality traits using WGCNA.

Creating a biomedical knowledge base by addressing GPT inaccurate responses and benchmarking context

GNQA, a retrieval-augmented GPT question-answering system over 3000 GeneNetwork, aging and diabetes papers, cites source paragraphs; RAGAS rated answer relevance above human thumbs-up ratings (89% vs 76%).

Transcriptome Profiling of Resistance Genes Analogs in Soybean's Cross-Tolerance to Water Limitation and Rust Stress

This study examines how soybean responds to combined water limitation and rust stress by analyzing gene expression changes over time, revealing cross-tolerance mechanisms and key resistance gene analogs.

Translational landscape during Seed Germination at Sub-Codon resolution

This study uses ribosome profiling to analyze translational regulation during Arabidopsis seed germination, identifying codon usage patterns and uORFs involved in translational control.

Comparative transcriptomics of Hirschfeldia incana and relatives highlights differences in photosynthetic pathways

The paper compares transcriptomic responses to high light in Hirschfeldia incana and three Brassicaceae species to identify differences in photosynthetic pathways.

The effect of developmental variation on expression QTLs in a multi parental C. elegans population

This study investigates how developmental age variation affects eQTL patterns in C. elegans using dynamical eQTL mapping and compares it to classical methods.

The genetics of gene expression in a C. elegans multi parental recombinant inbred line population.

The paper uses a multi-parental recombinant inbred line population in C. elegans to study gene expression variation and identifies eQTLs and trans-bands affecting gene expression.

WormQTL2: an interactive platform for systems genetics in Caenorhabditis elegans

WormQTL2 is a database platform that integrates and allows analysis of eQTL datasets in C. elegans to facilitate systems genetics research.

A multi-parent recombinant inbred line population of Caenorhabditis elegans enhances mapping resolution and identification of novel QTLs for complex life-history traits

This study develops a multi-parent recombinant inbred line population of C. elegans to improve QTL mapping resolution and identify novel QTLs for life-history traits.