Author

Carlotta Pietroni

University of CopenhagenORCID 0000-0002-2964-9829Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Assay:metagenomics· 2 Research Focus:cell type annotation· 1 Research Focus:cell-cell communication· 1 Organism:chicken / avian· 1 Assay:DNA methylation· 1 Approach:experimental assay· 1 Research Focus:gene regulatory network inference· 1 Assay:metabolomics· 1

Frequent Co-Authors

Anders Miki BojeseniD· 2 shared Antton AlberdiiD· 2 shared Jorge LangaiD· 2 shared Amali Toffano· 1 shared Amalia BogriiD· 1 shared Bjørge WesterengiD· 1 shared Bryan Z. WangiD· 1 shared Ida Cecilie Naundrup ThøfneriD· 1 shared

Activity by Year

2025-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 35 mutual co-author links

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2 shared papersBioinformatics

Anders Miki BojesenORCID

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2 papers

Recent·Most cited

Integrative holo-omic data analysis predicts interactions across the host-microbiome axis

Jenny Merkesvik, Jorge Langa, Carlotta Pietroni, Antton Alberdi, Louise Ladefoged Poulsen, Anders Miki Bojesen, Topi Meuronen, Soile Turunen, Olli K. Kärkkäinen, Bjørge Westereng, Phillip Byron Pope, Torgeir Rhoden Hvidsten

The paper integrates holo-omic data from porcine hosts and gut microbiomes to predict host-microbiome interactions, identifying both known and novel relationships.

Microbiology Spectrum · Sep 28, 2026Peer-reviewedBioinformatics

Micro-scale spatial metagenomics: revealing high-resolution spatial biogeography of gut microbiomes

Carlotta Pietroni, Bryan Z. Wang, Amalia Bogri, Jorge Langa, Iñaki Odriozola, Zoé Horisberger, Marta Contreras‐Serrano, Jonas Greve Lauritsen, Nanna Gaun, Amali Toffano, Anders Miki Bojesen, Ida Cecilie Naundrup Thøfner, Victoria Drauch, Søren Johannes Sørensen, Urvish Trivedi, Antton Alberdi

This paper introduces MSSM, a method for high-resolution spatial metagenomics that enables strain-level analysis of gut microbiomes at the microscale.

bioRxiv · Sep 30, 2025 · PreprintMicrobiology