Konner Winkley

Neonatal hyperoxia induces sex-dependent pulmonary cellular and transcriptomic changes in an experimental mouse model of bronchopulmonary dysplasia

This study investigates sex-dependent molecular and cellular changes in mouse lungs exposed to hyperoxia, identifying distinct progenitor and reparative responses in males and females.

Single-cell analysis of cell fate bifurcation in the chordate Ciona

The paper uses single-cell RNA-seq to analyze cell fate bifurcation in Ciona robusta, identifying 53 cell states and highlighting the role of MAPK signaling and Elk1/3/4 in fate specification.

High-resolution epigenome analysis in nasal samples derived from children with respiratory viral infections reveals striking changes upon SARS-CoV-2 infection

The paper analyzes DNA methylation changes in nasal samples from infants with respiratory viral infections, identifying virus-specific differentially methylated regions and their association with immune responses.

Brachyury controls Ciona notochord fate as part of a feedforward network and not as a unitary master regulator

This study shows Brachyury (Bra) is not a unitary master regulator of notochord fate in Ciona, but functions in a feedforward network with Foxa.a.