Dario Pescini

INTEGRATE integrates metabolomics and transcriptomics data to identify metabolic flux regulation at the enzyme expression and metabolic levels in cancer cell lines.

ExTaxsI retrieves and visualizes biodiversity molecular data from NCBI to improve experimental design and highlight data gaps.

GPRuler automatically reconstructs gene-protein-reaction rules for metabolic networks using biological databases, achieving high accuracy in both small-scale and genome-scale models.

The paper reconstructs the first genome-scale metabolic model for Zygosaccharomyces parabailii, demonstrating its potential for metabolic engineering and industrial applications.

This paper integrates single-cell RNA-seq data into metabolic models to characterize tumour cell populations and identifies metabolic heterogeneity and interactions.