Author

Loïc de Pontual

Hôpital Jean-VerdierORCID 0000-0002-3123-0453Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Approach:statistical model· 2 Assay:whole-genome sequencing· 2 Research Focus:drug response / drug discovery· 1 Research Focus:phylogenetics / evolution· 1 Research Focus:variant calling· 1

Frequent Co-Authors

A. WerneriD· 1 shared André BirgyiD· 1 shared Assiya El Mniai· 1 shared Christophe RodrigueziD· 1 shared Corinne LévyiD· 1 shared Emmanuelle VaroniD· 1 shared Étienne CarbonnelleiD· 1 shared Fatma Magdoud El Alaoui· 1 shared

Activity by Year

2023-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 29 mutual co-author links

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1 shared paperMicrobiology

A. WernerORCID

Mutual co-authors in cluster

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2 papers

Recent·Most cited

MicrobiologybioRxivPreprintJul 1, 2026

Quantifying the mechanisms of vaccine-induced serotype replacement in Streptococcus pneumoniae using genome-informed modelling

Zein Assad, Kévin La, Corinne Lévy…·Naïm Ouldali

The paper quantifies how serotype replacement in Streptococcus pneumoniae is driven by shifts in serotypes within persistent lineages rather than lineage replacement, using genome-informed modeling and longitudinal data.

DOI 10.64898/2026.06.29.735370

whole-genome sequencingstatistical model

𝕏 PostBluesky

BioinformaticsTuberculosisPeer-reviewedMar 1, 2023

Performances of bioinformatics tools for the analysis of sequencing data of Mycobacterium tuberculosis complex strains

Pauline Quagliaro, Samira Dziri, Fatma Magdoud El Alaoui…·Typhaine Billard‐Pomares

This study evaluates two bioinformatics tools for analyzing MTBC sequencing data, finding high concordance with phenotypic testing and high agreement in lineage determination.

5 citations

whole-genome sequencingstatistical model

𝕏 PostBluesky