Author

Ashok Kumar Krishnamurthy

University of North Carolina at Chapel HillORCID 0000-0002-3215-7622Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 1 Neuroscience· 1

Signature Assays, Organisms & Methods

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Research Focus:cell type annotation· 1 Research Focus:database / resource· 1 Approach:experimental assay· 1 Assay:imaging· 1 Organism:mouse· 1 Approach:statistical model· 1

Frequent Co-Authors

Alex WaldropiD· 1 shared Alexander PreissiD· 1 shared Andrew Crerar· 1 shared Benjamin W. ReesiD· 1 shared Carl Schreep· 1 shared Chris BizoniD· 1 shared Chris M BalliD· 1 shared Ellie Hadden-FordiD· 1 shared

Activity by Year

2020-2021 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 21 mutual co-author links

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1 shared paperBioinformatics

Alex WaldropORCID

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2 papers

Recent·Most cited

Dug: A Semantic Search Engine Leveraging Peer-Reviewed Knowledge to Span Biomedical Data Repositories

Alex Waldrop, John B. Cheadle, Kira Bradford, Alexander Preiss, Robert Chew, Jonathan R. Holt, Nathan Braswell, Matt Watson, Andrew Crerar, Chris M Ball, Yaphet Kebede, Carl Schreep, P J Linebaugh, Hannah Hiles, Rebecca Boyles, , Steve Cox

Dug is a semantic search tool that improves dataset retrieval across biomedical repositories by using curated knowledge graphs, outperforming Elasticsearch in recall and handling synonyms effectively.

bioRxiv · Jul 7, 2021 · PreprintBioinformatics

NuMorph: tools for cellular phenotyping in tissue cleared whole brain images

Oleh Krupa, Giulia Fragola, Ellie Hadden-Ford, Jessica T. Mory, Tianyi Liu, Zachary Humphrey, Benjamin W. Rees, Ashok Kumar Krishnamurthy, William D. Snider, Mark J. Zylka, Guorong Wu A, Lei Xing, Jason L. Stein

NuMorph quantifies nuclei and nuclear markers in cleared mouse brain images, revealing gene deletion effects on cell-type distribution and brain morphology in two mouse models.

bioRxiv · Sep 11, 2020 · PreprintNeuroscience