Author

Kentaro Shimizu

Collaborative Research Institute for Innovative Microbiology, The University of TokyoORCID 0000-0002-3245-0052Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 2

Signature Assays, Organisms & Methods

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Approach:statistical model· 2 Organism:Arabidopsis· 1 Research Focus:benchmarking· 1 Research Focus:cell type annotation· 1 Research Focus:differential expression· 1 Assay:protein structure· 1 Research Focus:protein structure prediction· 1 Assay:scRNA-seq· 1

Frequent Co-Authors

Hanting Jiang· 1 shared Itoshi NikaidoiD· 1 shared Kenta SatoiD· 1 shared Kohji MuraseiD· 1 shared Koki TsuyuzakiiD· 1 shared Seiji TakayamaiD· 1 shared Tohru TeradaiD· 1 shared Tomoki Sawa· 1 shared

Activity by Year

2019-2023 · peak 1/yr

Co-Author Collaboration Network

9 top collaborators · 18 mutual co-author links

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1 shared paperBioinformatics

Hanting Jiang

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2 papers

Recent·Most cited

Comprehensive computational analysis of the SRK-SP11 molecular interaction underlying self-incompatibility in Brassicaceae using improved structure prediction for cysteine-rich proteins

Tomoki Sawa, Yoshitaka Moriwaki, Hanting Jiang, Kohji Murase, Seiji Takayama, Kentaro Shimizu, Tohru Terada

The paper improves structure prediction for cysteine-rich proteins in Brassicaceae and analyzes eSRK-SP11 binding modes across haplotypes.

Computational and Structural Biotechnology Journal · Jan 1, 2023Peer-reviewedBioinformatics

CellFishing.jl: an ultrafast and scalable cell search method for single-cell RNA-sequencing

Kenta Sato, Koki Tsuyuzaki, Kentaro Shimizu, Itoshi Nikaido

CellFishing.jl efficiently searches large scRNA-seq datasets to find similar cells and identify notable genes with high accuracy and speed.

Genome biology · Feb 11, 2019Peer-reviewedBioinformatics