Author

Masashi Yokochi

Institute for Protein Research, The University of OsakaORCID 0000-0002-3253-7449Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Biochemistry· 1 Bioinformatics· 1

Signature Assays, Organisms & Methods

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Research Focus:benchmarking· 2 Research Focus:database / resource· 2 Approach:experimental assay· 1 Assay:protein structure· 1 Research Focus:software / tool· 1 Approach:statistical model· 1

Frequent Co-Authors

Benjamin BardiauxiD· 2 shared Charles D. SchwietersiD· 2 shared Eliza PłoskońiD· 2 shared Ezra PeisachiD· 2 shared Gaetano Thomas MontelioneiD· 2 shared Geerten W. VuisteriD· 2 shared Genji KurisuiD· 2 shared Jeffrey C. HochiD· 2 shared

Activity by Year

2024-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

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2 shared papersBiochemistry

Benjamin BardiauxORCID

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Author profile →

2 papers

Recent·Most cited

The NMR Exchange Format (NEF): Specification and Applications

Eliza Płoskoń, Kumaran Baskaran, Roberto Tejero, Charles D. Schwieters, Benjamin Bardiaux, Peter Güntert, Rasmus H. Fogh, Aleksandras Gutmanas, Edward J. Brooksbank, Masashi Yokochi, David Scott Wishart, Jonathan R. Wedell, Wim Vranken, Daniel Thompson, Gary S. Thompson, , Geerten W. Vuister

The paper introduces NEF, a standard for NMR data exchange, and demonstrates its application in structure determination, metabolomics, and ligand screening.

bioRxiv · Apr 24, 2026 · PreprintBiochemistry

Restraint Validation of Biomolecular Structures Determined by NMR in the Protein Data Bank

Kumaran Baskaran, Eliza Płoskoń, Roberto Tejero, Masashi Yokochi, Déborah Harrus, Yu‐He Liang, Ezra Peisach, Irina Persikova, Theresa A. Ramelot, Monica R. Sekharan, James L. Tolchard, John Westbrook, Benjamin Bardiaux, Charles D. Schwieters, Ardan Patwardhan, , Jasmine Y. Young

The paper develops a standardized system for validating biomolecular structures against NMR restraints using NEF and NMR-STAR formats, implemented in the wwPDB OneDep system.

Structure · Mar 14, 2024Peer-reviewedBioinformatics