Author
Institute for Protein Research, The University of OsakaORCID 0000-0002-5354-0807Unclaimed ORCID profile · follow to get notified of new preprints
9 papers
Recent·Most cited
Chimari Jiko, Atsuki Nakano, Yosuke Teshirogi, Eiki Yamashita, Genji Kurisu, Daron M. Standley, Tohru Terada, Kaoru Mitsuoka, Ken Yokoyama, Christoph Gerle
The paper identifies a planar dimeric form of bovine ATP synthase with minimal membrane bending, contrasting with canonical dimers that induce significant curvature.
Cell Death and Differentiation · Jul 3, 2026Peer-reviewedBiophysics
Eliza Płoskoń, Kumaran Baskaran, Roberto Tejero, Charles D. Schwieters, Benjamin Bardiaux, Peter Güntert, Rasmus H. Fogh, Aleksandras Gutmanas, Edward J. Brooksbank, Masashi Yokochi, David Scott Wishart, Jonathan R. Wedell, Wim Vranken, Daniel Thompson, Gary S. Thompson, , Geerten W. Vuister
The paper introduces NEF, a standard for NMR data exchange, and demonstrates its application in structure determination, metabolomics, and ligand screening.
bioRxiv · Apr 24, 2026 · PreprintBiochemistry
Yu Ogawa, Gyana Prakash Mahapatra, Yuval Milrad, Michelle Schimpf, Genji Kurisu, Michael Hippler, Jan M. Schuller
The paper presents a cryo-EM structure of a Cyt c:PSI complex from Chlamydomonas reinhardtii, revealing key interactions involved in electron transfer.
bioRxiv · Sep 8, 2025 · PreprintBiochemistry
Thanusha Dhananji Abeywickrama, Hideaki Tanaka, Genji Kurisu, Inoka Chinthana Perera
This study investigates the K+/Na+ dependent oligomerization and DNA binding mechanism of MoyR, a GntR family regulator in M. tuberculosis, revealing its role in gene regulation and potential as a drug target.
bioRxiv · Aug 21, 2025 · PreprintMolecular Biology
Fjoralba Zeqiri, Thomas Schmidt, Yuko Misumi, Yohei Miyanoiri, Nicole Frankenberg‐Dinkel, Genji Kurisu, Eckhard Hofmann
The paper investigates the structural basis of PebS-ferredoxin recognition in cyanophages, showing coevolution between phage enzymes and host-like electron donors.
bioRxiv · Jul 23, 2025 · PreprintMolecular Biology
Kumaran Baskaran, Eliza Płoskoń, Roberto Tejero, Masashi Yokochi, Déborah Harrus, Yu‐He Liang, Ezra Peisach, Irina Persikova, Theresa A. Ramelot, Monica R. Sekharan, James L. Tolchard, John Westbrook, Benjamin Bardiaux, Charles D. Schwieters, Ardan Patwardhan, , Jasmine Y. Young
The paper develops a standardized system for validating biomolecular structures against NMR restraints using NEF and NMR-STAR formats, implemented in the wwPDB OneDep system.
Structure · Mar 14, 2024Peer-reviewedBioinformatics
Preeti Choudhary, Zukang Feng, John M. Berrisford, Henry Chao, Yasuyo Ikegawa, Ezra Peisach, Dennis W. Piehl, James Smith, Ahsan Tanweer, Mihály Váradi, John Westbrook, Jasmine Y. Young, Ardan Patwardhan, Kyle L. Morris, Jeffrey C. Hoch, , Stephen Kevin Burley
The PDB NextGen Archive centralizes and streamlines access to integrated structural annotations and enriched data from wwPDB partners and external sources.
Database · Jan 1, 2024Peer-reviewedBioinformatics
Jack Turner, Sanja Abbott, Neli Fonseca, Ryan Pye, Lucas Carrijo de Oliveira, Amudha Kumari Duraisamy, Osman Salih, Zhe Wang, Gerard J. Kleywegt, Kyle L. Morris, Ardan Patwardhan, Stephen Kevin Burley, G.V. Crichlow, Zukang Feng, Justin W. Flatt, , Xiaodan Ma
The paper provides an overview of the EMDB archive, its current holdings, recent updates, and future plans.
Nucleic Acids Research · Oct 20, 2023Peer-reviewedBioinformatics
Brinda Kizhakke Vallat, Gerardo Tauriello, Stefan Bienert, Juergen Haas, Benjamin Webb, Augustin Žídek, Wei Hui Zheng, Ezra Peisach, Dennis W. Piehl, Ivan Anischanka, Ian Sillitoe, James L. Tolchard, Mihály Váradi, David A. Baker, Christine Anne Orengo, , John Westbrook
ModelCIF extends the PDBx/mmCIF standard to represent predicted 3D protein models, enabling FAIR data sharing for computational structural biology.
Journal of Molecular Biology · Feb 22, 2023Peer-reviewedBioinformatics