Author

Jeffrey C. Hoch

UConn HealthORCID 0000-0002-9230-2019Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Research Focus:database / resource· 5 Assay:protein structure· 3 Research Focus:benchmarking· 2 Approach:experimental assay· 2 Assay:electronic health records· 1 Research Focus:software / tool· 1 Approach:statistical model· 1

Frequent Co-Authors

Ezra PeisachiD· 5 shared Genji KurisuiD· 5 shared Stephen Kevin BurleyiD· 5 shared Ardan PatwardhaniD· 4 shared Sameer S VelankariD· 4 shared Jasmine Y. YoungiD· 3 shared John WestbrookiD· 3 shared Kumaran BaskaraniD· 3 shared

Activity by Year

2023-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 44 mutual co-author links

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5 shared papersBioinformatics

Ezra PeisachORCID

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Author profile →

5 papers

Recent·Most cited

The NMR Exchange Format (NEF): Specification and Applications

Eliza Płoskoń, Kumaran Baskaran, Roberto Tejero, Charles D. Schwieters, Benjamin Bardiaux, Peter Güntert, Rasmus H. Fogh, Aleksandras Gutmanas, Edward J. Brooksbank, Masashi Yokochi, David Scott Wishart, Jonathan R. Wedell, Wim Vranken, Daniel Thompson, Gary S. Thompson, , Geerten W. Vuister

The paper introduces NEF, a standard for NMR data exchange, and demonstrates its application in structure determination, metabolomics, and ligand screening.

bioRxiv · Apr 24, 2026 · PreprintBiochemistry

Restraint Validation of Biomolecular Structures Determined by NMR in the Protein Data Bank

Kumaran Baskaran, Eliza Płoskoń, Roberto Tejero, Masashi Yokochi, Déborah Harrus, Yu‐He Liang, Ezra Peisach, Irina Persikova, Theresa A. Ramelot, Monica R. Sekharan, James L. Tolchard, John Westbrook, Benjamin Bardiaux, Charles D. Schwieters, Ardan Patwardhan, , Jasmine Y. Young

The paper develops a standardized system for validating biomolecular structures against NMR restraints using NEF and NMR-STAR formats, implemented in the wwPDB OneDep system.

Structure · Mar 14, 2024Peer-reviewedBioinformatics

PDB NextGen Archive: Centralising Access to Integrated Annotations and Enriched Structural Information by the Worldwide Protein Data Bank

Preeti Choudhary, Zukang Feng, John M. Berrisford, Henry Chao, Yasuyo Ikegawa, Ezra Peisach, Dennis W. Piehl, James Smith, Ahsan Tanweer, Mihály Váradi, John Westbrook, Jasmine Y. Young, Ardan Patwardhan, Kyle L. Morris, Jeffrey C. Hoch, , Stephen Kevin Burley

The PDB NextGen Archive centralizes and streamlines access to integrated structural annotations and enriched data from wwPDB partners and external sources.

Database · Jan 1, 2024Peer-reviewedBioinformatics

EMDB - The Electron Microscopy Data Bank

Jack Turner, Sanja Abbott, Neli Fonseca, Ryan Pye, Lucas Carrijo de Oliveira, Amudha Kumari Duraisamy, Osman Salih, Zhe Wang, Gerard J. Kleywegt, Kyle L. Morris, Ardan Patwardhan, Stephen Kevin Burley, G.V. Crichlow, Zukang Feng, Justin W. Flatt, , Xiaodan Ma

The paper provides an overview of the EMDB archive, its current holdings, recent updates, and future plans.

Nucleic Acids Research · Oct 20, 2023Peer-reviewedBioinformatics

ModelCIF: An extension of PDBx/mmCIF data representation for computed structure models

Brinda Kizhakke Vallat, Gerardo Tauriello, Stefan Bienert, Juergen Haas, Benjamin Webb, Augustin Žídek, Wei Hui Zheng, Ezra Peisach, Dennis W. Piehl, Ivan Anischanka, Ian Sillitoe, James L. Tolchard, Mihály Váradi, David A. Baker, Christine Anne Orengo, , John Westbrook

ModelCIF extends the PDBx/mmCIF standard to represent predicted 3D protein models, enabling FAIR data sharing for computational structural biology.

Journal of Molecular Biology · Feb 22, 2023Peer-reviewedBioinformatics