Author

Sascha Patz

University of TübingenORCID 0000-0002-3385-8922Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 4 Microbiology· 1

Signature Assays, Organisms & Methods

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Assay:metagenomics· 4 Research Focus:database / resource· 2 Research Focus:differential expression· 2 Approach:statistical model· 2 Organism:bacteria (other)· 1 Research Focus:cell type annotation· 1 Approach:experimental assay· 1 Approach:machine learning (classical)· 1

Frequent Co-Authors

Daniel H. HusoniD· 3 shared Anupam GautamiD· 2 shared Benjamin Albrecht· 1 shared Byoung Seung JeoniD· 1 shared Catherine M. Spirito· 1 shared Cathy C. Westhues· 1 shared DH. Huson· 1 shared Jeffrey J. WerneriD· 1 shared

Activity by Year

2019-2024 · peak 3/yr

Co-Author Collaboration Network

10 top collaborators · 14 mutual co-author links

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3 shared papersBioinformatics

Daniel H. HusonORCID

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Author profile →

5 papers

Recent·Most cited

The gases H2 and O2 in open-culture reactors influence the performance and microbiota of chain elongation into n-caproate and n-caprylate.

Catherine M. Spirito, Timo N. Lucas, Sascha Patz, Byoung Seung Jeon, Jeffrey J. Werner, Lauren H. Trondsen, Juan J. Guzman, Daniel H. Huson, Largus Theodora Angenent

This study investigates how H2 and O2 levels in open-culture reactors affect n-caproate and n-caprylate production and microbiota composition.

mSystems · Jul 11, 2024Peer-reviewedMicrobiology

Interpretable Machine Learning Decodes Soil Microbiome's Response to Drought Stress

Michelle Hagen, Rupashree Dass, Cathy C. Westhues, Jochen Blom, Sebastian J. Schultheiß, Sascha Patz

This paper uses interpretable machine learning to predict drought stress in soil metagenomes with high accuracy by identifying marker taxa.

Environmental Microbiome · May 29, 2024Peer-reviewedBioinformatics

mgPGPT: Metagenomic analysis of plant growth-promoting traits

Sascha Patz, Mario Rauh, Anupam Gautam, Daniel H. Huson

The paper extends the PGPT ontology to analyze metagenomic datasets, introducing mgPGPT-db and integrating it into MEGAN for PGPT-related gene identification.

bioRxiv · Feb 17, 2024 · PreprintBioinformatics

PLaBAse: A comprehensive web resource for analyzing the plant growth-promoting potential of plant-associated bacteria

Sascha Patz, Anupam Gautam, M. Becker, Silke Ruppel, Pablo Rodríguez‐Palenzuela, DH. Huson

PLaBAse annotates bacterial genomes against a curated ontology of ∼6,900 plant growth-promoting traits; applied to 70,540 genomes, plant symbionts and rhizobacteria had the largest genomes and most traits.

bioRxiv · Dec 13, 2021 · PreprintBioinformatics✦ In-depth digest

Anti-consensus: detecting trees that have an evolutionary signal that is lost in consensus

Daniel H. Huson, Benjamin Albrecht, Sascha Patz, Mike Steel

The paper introduces an anti-consensus network to highlight significant discrepancies in gene trees, demonstrating its use with Kosakonia species and strains.

bioRxiv · Jul 29, 2019 · PreprintBioinformatics