Author
Fujian Agriculture and Forestry UniversityORCID 0000-0002-3460-8570Unclaimed ORCID profile · follow to get notified of new preprints
9 papers
Recent·Most cited
Jianhui Gu, Wenli Chen, De-Zhu Li, Haibao Tang, Xiang Li
The paper introduces GouMang, a framework to trace karyotype evolution across plants, revealing conserved patterns and the role of whole-genome duplications in adaptation.
bioRxiv · Jul 2, 2026 · PreprintEvolutionary Biology
Siren Lan, Ke-Wei Liu, Zhen Li, Yu‐Yun Hsiao, Yuanyuan Liu, Diyang Zhang, Xuewei Zhao, Wei-Hong Sun, Ding‐Kun Liu, Ming‐Zhong Huang, Cheng‐Yuan Zhou, Meng-Yao Zeng, Linying Wang, Ruiyue Zheng, Zhuang Zhao, , Zhong‐Jian Liu
The paper presents chromosome-level genomes for two orchids, revealing insights into their evolutionary relationships and genome size variation.
bioRxiv · Jun 13, 2025 · PreprintGenomics
Won Cheol Yim, Mia Swain, Dongna Ma, Hong An, Kevin A. Bird, David D. Curdie, Samuel Wang, Hyun Don Ham, Agusto Luzuriaga-Neira, Jay S. Kirkwood, Manhoi Hur, Juan K. Q. Solomon, Jeffrey F. Harper, Dylan K. Kosma, David Alvarez‐Ponce, , Xingtan Zhang
This study completes the Triangle of U by sequencing the genome of Brassica carinata, revealing genomic features and gene family expansions linked to its agronomic traits.
bioRxiv · Jan 3, 2022 · PreprintGenetics
Guifang Lin, Cheng He, Jun Zheng, Dal‐Hoe Koo, Ha Le, Huakun Zheng, Tej Man Tamang, Jinguang Lin, Yàn Liú, Mingxia Zhao, Yangfan Hao, Frank McFraland, Bo Wang, Yang Qin, Haibao Tang, , Sanzhen Liu
This paper presents a chromosome-level genome assembly of maize inbred line A188 and identifies structural variations and gene expression differences compared to the reference line B73.
Genome biology · Jun 9, 2021Peer-reviewedGenomics
Cheng He, Guifang Lin, Hairong Wei, Haibao Tang, Frank F. White, Barbara S. Valent, Sanzhen Liu
This study introduces KAD, a method to estimate base errors and assess genome assembly quality by comparing k-mer abundance from short reads and assembled sequences.
NAR Genomics and Bioinformatics · Sep 1, 2020Peer-reviewedBioinformatics
Peng Zhao, Ely Oliveira Garcia, Guifang Lin, Ying Hu, Melinda Dalby, Pierre Migeon, Haibao Tang, MARK L. FARMAN, David E. Cook, Frank F. White, Barbara S. Valent, Sanzhen Liu
The paper reports the genome of a wheat blast fungus, revealing dispensable mini-chromosomes containing effector genes that evolve rapidly and contribute to pathogen adaptation.
PLoS Genetics · Sep 12, 2019Peer-reviewedGenomics
Ying‐Chen Claire Hou, Hung‐Chun Yu, Rick Martin, Natalie M. Schenker-Ahmed, Michael A. Hicks, Elizabeth T. Cirulli, Isaac V. Cohen, Thomas J. Jönsson, Robyn Heister, Lori A. Napier, Christine Leon Swisher, Saints Dominguez, Haibao Tang, Weizhong Li, Jaime J. Barea, , C. Thomas Caskey
This study evaluates a precision health platform integrating whole genome sequencing and noninvasive clinical assessments in 1190 healthy participants, identifying significant genetic and phenotypic findings linked to disease risk.
bioRxiv · Dec 17, 2018 · PreprintGenomics
Christoph Lippert, Riccardo Sabatini, M. Cyrus Maher, Eun Yong Kang, Seunghak Lee, Okan Arıkan, Alena S. Harley, Axel Bernal, Peter Garst, Victor P. Lavrenko, Kenneth Yocum, Theodore M. Wong, Mingfu Zhu, Wen-Yun Yang, Christopher C. Chang, , J. Craig Venter
The paper addresses criticisms of a previous study on identifying individuals from whole-genome sequencing data by demonstrating the limitations of Erlich's simulation and highlighting the algorithm's use of multiple trait-based predictive models.
bioRxiv · Oct 19, 2017 · PreprintGenomics
Shuqing Xu, Thomas Brockmöller, Aura Navarro‐Quezada, Heiner Kuhl, Klaus Gase, Zhihao Ling, Wenwu Zhou, Christoph Kreitzer, Mario Stanke, Haibao Tang, Eric H. Lyons, Priyanka Pandey, Shree Prakash Pandey, Bernd Timmermann, Emmanuel Gaquerel, Ian Thomas Baldwin
This study sequenced wild tobacco genomes to uncover how nicotine biosynthesis evolved through gene duplications and transposable elements.
Proceedings of the National Academy of Sciences · May 23, 2017Peer-reviewedGenomics