Author

Emmanuel Gaquerel

Centre National de la Recherche ScientifiqueORCID 0000-0003-0796-6417Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 1 Genomics· 1 Plant Biology· 1

Signature Assays, Organisms & Methods

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Organism:plant (other)· 2 Assay:bulk RNA-seq· 1 Research Focus:cell type annotation· 1 Approach:deep learning· 1 Approach:experimental assay· 1 Research Focus:gene regulatory network inference· 1 Assay:metabolomics· 1 Approach:statistical model· 1

Frequent Co-Authors

Abdelmalek Alioua· 1 shared Aude PoucletiD· 1 shared Aura Navarro‐Quezada· 1 shared Bernd Timmermann· 1 shared Christoph Kreitzer· 1 shared Claire ParageiD· 1 shared Danièle Werck‐ReichhartiD· 1 shared David ElseriD· 1 shared

Activity by Year

2017-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 18 mutual co-author links

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1 shared paperPlant Biology

Abdelmalek Alioua

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3 papers

Recent·Most cited

Plant BiologybioRxivPreprintApr 13, 2026

Discovery of Scrophularia nodosa harpagoside synthase, a novel BAHD cinnamoyltransferase, bridges a key gap in the iridoid biosynthetic pathway

Dorian Rossi, Sheng Wang, Aude Pouclet…·Nicolas Navrot

The paper identifies and characterizes harpagoside synthase, a BAHD cinnamoyltransferase, as the enzyme responsible for the final step in harpagoside biosynthesis in Scrophularia nodosa.

DOI 10.64898/2026.04.10.711996

plant (other)bulk RNA-seq

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BioinformaticsbioRxivPreprintJul 6, 2023

Mass2SMILES: deep learning based fast prediction of structures and functional groups directly from high-resolution MS/MS spectra.

David Elser, Florian Huber, Emmanuel Gaquerel

Mass2SMILES predicts chemical structures and functional groups from MS/MS spectra using a deep neural network, achieving high accuracy and speed for metabolomics data.

12 citations

metabolomicsdeep learning

𝕏 PostBluesky

GenomicsProceedings of the National Academy of SciencesPeer-reviewedMay 23, 2017

Wild tobacco genomes reveal the evolution of nicotine biosynthesis

Shuqing Xu, Thomas Brockmöller, Aura Navarro‐Quezada…·Ian Thomas Baldwin

This study sequenced wild tobacco genomes to uncover how nicotine biosynthesis evolved through gene duplications and transposable elements.

203 citationstop 1%

plant (other)whole-genome sequencing

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