Ziwei Xue

The paper constructs a single-cell GEX-TCR reference atlas and introduces TCR-DeepInsight, a deep-learning framework to characterize disease-associated TCRs.

The paper benchmarks TCR reconstruction methods from scRNA-seq data, finding TRUST4 performs best, while sequencing depth limits accuracy.

This study benchmarks eleven isoform detection methods for TGS data, finding StringTie2 and Bambu excel in sensitivity and precision, respectively.

MSdb provides an integrated expression atlas of human musculoskeletal system data with visualization, analysis tools, and curated phenotype information.

RAD identifies region-associated differentially expressed genes by linking genomic regions to gene expression changes, providing visualization and statistical analysis.