Zhejian Yu

The paper introduces art_modern, an accelerated ART simulator for NGS data, achieving faster CPU and wall-clock times compared to the original implementation.

The paper benchmarks TCR reconstruction methods from scRNA-seq data, finding TRUST4 performs best, while sequencing depth limits accuracy.

This study benchmarks eleven isoform detection methods for TGS data, finding StringTie2 and Bambu excel in sensitivity and precision, respectively.