Author

Issac Chaudry

University of Maryland, BaltimoreORCID 0000-0002-3497-3105Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

Click to filter author papers

Bioinformatics· 1 Microbiology· 1

Signature Assays, Organisms & Methods

Click to filter · or open tag

Assay:metagenomics· 2 Organism:bacteria (other)· 1 Research Focus:cell type annotation· 1 Research Focus:clustering· 1 Research Focus:database / resource· 1 Research Focus:differential expression· 1 Approach:experimental assay· 1 Organism:human· 1

Frequent Co-Authors

Jacques RaveliD· 2 shared Michael FranceiD· 2 shared A. Maros· 1 shared Atiqur RahmaniD· 1 shared Bing MaiD· 1 shared Breanna Shirtliff· 1 shared David A. RelmaniD· 1 shared E. McComb· 1 shared

Activity by Year

2025-2025 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

2 shared papersBioinformatics

Jacques RavelORCID

Mutual co-authors in cluster

Author profile →

2 papers

Recent·Most cited

kSanity: A k-mer based application forprecision bacterial strain detection andquantification

Michael France, Issac Chaudry, Joseph Elsherbini, Jacques Ravel

kSanity detects and quantifies bacterial strains in metagenomic data using k-mer matching, showing precision even at low coverage.

bioRxiv · Sep 4, 2025 · PreprintBioinformatics

VIRGO2: Unveiling the Functional and Ecological Complexity of the Vaginal Microbiome with an Enhanced Non-Redundant Gene Catalog

Michael France, Issac Chaudry, Lindsay Rutt, M. Quain, Breanna Shirtliff, E. McComb, A. Maros, M. Alizadeh, Fatima A. Hussain, Michal A. Elovitz, David A. Relman, Atiqur Rahman, Rebecca M. Brotman, Joan T. Price, Margaret P. Kassaro, , Jacques Ravel

This study introduces VIRGO2, an enhanced gene catalog for the vaginal microbiome, revealing new bacterial species, mycobiome features, and gene expression patterns.

bioRxiv · Mar 4, 2025 · PreprintMicrobiology