Author

Jia Li

Chinese Academy of Tropical Agricultural SciencesORCID 0000-0002-3622-0342Unclaimed ORCID profile · follow to get notified of new preprints

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Jia Li10 papers · Chinese Academy of Sciences

Biology Disciplines

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Bioinformatics· 1 Genomics· 1 Molecular Biology· 1

Signature Assays, Organisms & Methods

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Approach:experimental assay· 2 Research Focus:cell type annotation· 1 Research Focus:clustering· 1 Research Focus:deconvolution· 1 Approach:deep learning· 1 Assay:DNA methylation· 1 Research Focus:gene regulatory network inference· 1 Organism:human· 1

Frequent Co-Authors

Caroline Callot· 1 shared Chaoqi Liang· 1 shared Chuan Li· 1 shared Hai LaniD· 1 shared Hervé VanderschureniD· 1 shared Hongliang Yan· 1 shared Jianle SuniD· 1 shared Junjia Xiang· 1 shared

Activity by Year

2017-2025 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 17 mutual co-author links

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1 shared paperGenomics

Caroline Callot

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3 papers

Recent·Most cited

scDNAm-GPT Captures Genome-wide CpG Dependencies in Single-cell DNA methylomes to Revolutionize Epigenetic Analysis

Chaoqi Liang, Peng Ye, Hongliang Yan, Peng Zheng, Jianle Sun, Yanni Wang, Yu Li, Yuchen Ren, Yuanpei Jiang, Ran Wei, Junjia Xiang, Sizhe Zhang, Linle Jiang, Weiqiang Bai, Xinzhu Ma, , Jia Li

scDNAm-GPT is a foundation model for single-cell DNA methylation analysis that improves clustering, trajectory inference, and deconvolution using context-aware tokenization and attention mechanisms.

bioRxiv · Feb 19, 2025 · PreprintBioinformatics

A BAC-guided haplotype assembly pipeline increases the resolution of the virus resistance locus CMD2 in cassava

Luc Cornet, Syed Shan‐e‐Ali Zaidi, Jia Li, Yvan Ngapout, Sara Shakir, Meunier Loic, Caroline Callot, William Marande, Marc Hanikenne, Stéphane Rombauts, Yves Van de Peer, Hervé Vanderschuren

The paper improves the resolution of the CMD2 locus in cassava by using BAC-guided haplotype assembly, revealing new stress resistance proteins.

bioRxiv · Oct 19, 2023 · PreprintGenomics

Cloning, Molecular Evolution And Functional Characterization Of ZmbHLH16, The Maize Ortholog Of OsTIP2 (OsbHLH142)

Yongming Liu, Jia Li, Wei Gui, Yonghao Sun, Yanli Lu, Hai Lan, Chuan Li, Suzhi Zhang, Moju Cao

The paper clones and characterizes ZmbHLH16, a maize bHLH transcription factor related to OsTIP2, showing its expression pattern, polymorphism, and interaction with ZmbHLH51.

Biology Open · Jan 1, 2017Peer-reviewedMolecular Biology