Author

Anthony Marius Smith

National Health Laboratory ServiceORCID 0000-0002-3637-7155Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Genomics· 1 Microbiology· 1 Molecular Biology· 1

Signature Assays, Organisms & Methods

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Organism:human· 2 Approach:statistical model· 2 Research Focus:variant calling· 2 Assay:whole-genome sequencing· 2 Organism:bacteria (other)· 1 Approach:benchmark study· 1 Research Focus:benchmarking· 1 Approach:deep learning· 1

Frequent Co-Authors

Kathryn E. HoltiD· 2 shared A. Peyton SmithiD· 1 shared Abdoulie KantehiD· 1 shared Abdul Karim SesayiD· 1 shared Aissatou Seck· 1 shared Arti KapiliD· 1 shared Assaf RokneyiD· 1 shared Ayorinde O. AfolayaniD· 1 shared

Activity by Year

2022-2025 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 20 mutual co-author links

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2 shared papersGenomics

Kathryn E. HoltORCID

Mutual co-authors in cluster

Author profile →

3 papers

Recent·Most cited

GenomicsMicrobial GenomicsPeer-reviewedDec 5, 2025

Genomic Diversity and Antimicrobial Resistance of Vibrio cholerae Isolates from Africa: A PulseNet Africa Initiative Using Nanopore Sequencing to Enhance Genomic Surveillance

Ebenezer Foster-Nyarko, Shola Able-Thomas, Nana Eghele Adade…·PulseNet Africa

This study uses whole-genome sequencing of Vibrio cholerae isolates from Africa to assess genomic diversity and antimicrobial resistance, highlighting the utility of WGS for enhanced surveillance.

6 citations

humanwhole-genome sequencing

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MicrobiologyGenome MedicinePeer-reviewedOct 24, 2025

✦ In-depth digest

Typhi Mykrobe: fast and accurate lineage identification and antimicrobial resistance genotyping directly from sequence reads for the typhoid fever agent Salmonella Typhi

Danielle J. Ingle, Jane Hawkey, Martin Hunt…·Kathryn E. Holt

Mykrobe k-mer panel genotypes Salmonella Typhi lineages, antimicrobial resistance (AMR) markers and plasmids from Illumina or nanopore reads, matching mapping-based lineage calls for 99.8% of genomes.

12 citationstop 5%

bacteria (other)human

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Molecular BiologybioRxivPreprintAug 12, 2022

Multiplex PCR Assay for Clade-typing Salmonella Enteritidis

Sarah Gallichan, Blanca M. Perez-Sepulveda, Nicholas Feasey…·Anthony Marius Smith

The paper develops a real-time PCR assay to differentiate Salmonella Enteritidis clades for public health surveillance in resource-limited settings.

DOI 10.1101/2022.08.12.503823

experimental assay

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