Author

Rodrigo Siqueira Reis

University of BernORCID 0000-0002-3673-014XUnclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Approach:statistical model· 3 Organism:Arabidopsis· 2 Assay:bulk RNA-seq· 2 Research Focus:differential expression· 2 Research Focus:gene regulatory network inference· 2 Research Focus:benchmarking· 1 Research Focus:cell type annotation· 1 Assay:DNA methylation· 1

Frequent Co-Authors

Dominique Jacques-VuaramboniD· 2 shared Jingmin HuaiD· 2 shared Abril San MartiniD· 1 shared Anthony TreicheliD· 1 shared Ariel Alejandro BazziniiD· 1 shared Chen XiaoiD· 1 shared Daniel Alejandro CarenoiD· 1 shared Dolly MehtaiD· 1 shared

Activity by Year

2025-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 25 mutual co-author links

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2 shared papersPlant Biology

Dominique Jacques-VuarambonORCID

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3 papers

Recent·Most cited

DECAPPING PROTEIN 5 regulates the circadian clock in Arabidopsis

Daniel Alejandro Careno, Soledad Perez Santangelo, Julieta Lisa Lisa Mateos, Luciana Bianchimano, Horacio Pallares, Dominique Jacques-Vuarambon, Micaela Sol Shalom, Abril San Martin, Maria Jose de Leone, Victor Daniel Aldas Bulos, Anthony Treichel, Martin Lewinski, Rodrigo Siqueira Reis, Dorothee Staiger, Ariel Alejandro Bazzini, Marcelo Javier Yanovsky

This study identifies DCP5 as a key regulator of circadian RNA stability in Arabidopsis by modulating the decay of high-amplitude clock-controlled genes.

bioRxiv · Nov 2, 2026 · PreprintPlant Biology

RNA structure conservation in plastids across plant evolution

Dolly Mehta, Chen Xiao, Jingmin Hua, Rodrigo Siqueira Reis

The paper identifies conserved RNA structures in plastid genomes across plants using a covariation-based pipeline, revealing known and novel regulatory elements.

bioRxiv · Aug 6, 2025 · PreprintBioinformatics

Transcriptional response to warm temperatures is confounded by organ-specificity

Jingmin Hua, Shitij Gupta, Dominique Jacques Vuarambon, Rodrigo Siqueira Reis

The paper shows that whole seedling transcriptomic data in Arabidopsis thaliana is confounded by organ-specific responses to warmth, with ~70% of DEGs not being organ-specific.

bioRxiv · Aug 5, 2025 · PreprintPlant Biology