Author

Brett G. Olivier

Vrije Universiteit AmsterdamORCID 0000-0002-5293-5321Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Research Focus:benchmarking· 3 Organism:bacteria (other)· 1 Approach:benchmark study· 1 Approach:experimental assay· 1 Research Focus:software / tool· 1 Approach:statistical model· 1

Frequent Co-Authors

Andreas DrägeriD· 2 shared Bas TeusinkiD· 2 shared Christian LieveniD· 2 shared Dong‐Yup LeeiD· 2 shared Frank BergmanniD· 2 shared Henning HermjakobiD· 2 shared Hongwu MaiD· 2 shared Hyun Uk KimiD· 2 shared

Activity by Year

2019-2024 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

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2 shared papersSystems Biology

Andreas DrägerORCID

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3 papers

Recent·Most cited

FROG Analysis Ensures the Reproducibility of Genome Scale Metabolic Models

Karthik Raman, Miroslav Kratochvíl, Brett G. Olivier, Matthias König, Pratyay Sengupta, Dinesh Kumar Kuppa Baskaran, Tung V. N. Nguyen, Daniel Lobo, St. Elmo Wilken, Krishna Kumar Tiwari, Aswathy K. Raghu, Indumathi Palanikumar, Lavanya Raajaraam, Maziya Ibrahim, Sanjaay Balakrishnan, , Rahuman S. Malik‐Sheriff

The paper introduces FROG analysis to standardize reproducibility assessments of genome-scale metabolic models, resulting in full reproducibility of all tested models.

bioRxiv · Sep 24, 2024 · PreprintSystems Biology

Memote: A community-driven effort towards a standardized genome-scale metabolic model test suite

Christian Lieven, Moritz E. Beber, Brett G. Olivier, Frank Bergmann, Meriç Ataman, Parizad Babaei, Jennifer A. Bartell, Lars M. Blank, Siddharth Chauhan, Kevin Correia, Christian Diener, Andreas Dräger, Birgitta E. Ebert, Janaka N. Edirisinghe, José P. Faria, , Cheng Zhang

Memote, open-source Python software, runs a community-maintained, partly scored test suite (consistency, biomass, annotations, optional experimental data) on SBML-encoded genome-scale metabolic models, once or through continuous integration.

Nature Biotechnology · Mar 1, 2020Peer-reviewedSystems Biology✦ In-depth digest

A Systematic Assessment Of Current Genome-Scale Metabolic Reconstruction Tools

Sebastián N. Mendoza, Brett G. Olivier, Douwe Molenaar B, Bas Teusink

This paper systematically evaluates genome-scale metabolic reconstruction tools to determine their quality and suitability for different applications.

Genome biology · Aug 7, 2019Peer-reviewedSystems Biology