Author

Zhaoqi Liu

Chinese Academy of SciencesORCID 0000-0002-3798-9583Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Organism:human· 4 Approach:statistical model· 4 Assay:bulk RNA-seq· 3 Research Focus:differential expression· 3 Research Focus:cell-cell communication· 2 Research Focus:gene regulatory network inference· 2 Research Focus:cell type annotation· 1 Research Focus:clustering· 1

Frequent Co-Authors

James L. ManleyiD· 2 shared Pedro Bak‐GordoniD· 2 shared Boyuan MeiiD· 1 shared Dali HaniD· 1 shared Feifan Zhang· 1 shared Guanghao LiangiD· 1 shared Haochen Ni· 1 shared Jian LiiD· 1 shared

Activity by Year

2024-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 21 mutual co-author links

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2 shared papersMolecular Biology

James L. ManleyORCID

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Author profile →

4 papers

Recent·Most cited

Tensor-based representation learning for multi-omics integrative clustering and feature discovery

Yang Zhang, Lin Liu, Zhaoqi Liu, Qi Liu, Lina Ma, Zhang Zhang

MIA is a tensor-based framework for multi-omics data integration that improves clustering and feature discovery, showing effectiveness in cancer subtype identification.

bioRxiv · Sep 10, 2026 · PreprintBioinformatics

Ultra-precision deconvolution of spatial transcriptomics decodes immune heterogeneity and fate-defining programs in tissues

Yin Xu, Zurui Huang, Yawei Zhang, Minghui Gong, Zhenghang Wang, Peijin Guo, Feifan Zhang, Jing Yang, Guanghao Liang, Lihui Dong, Renbao Chang, Yu Xia, Haochen Ni, Wenxuan Gong, Boyuan Mei, , Dali Han

The paper introduces UCASpatial, an ultra-precision spatial transcriptomics deconvolution algorithm, to improve the identification of immune cell subpopulations and their functional roles in tissue microenvironments.

Nature Communications · Mar 20, 2026Peer-reviewedBioinformatics

SUGP1 loss is the sole driver of SF3B1 hotspot mutant missplicing in cancer

Peiqi Xing, Pedro Bak‐Gordon, Jindou Xie, Jian Zhang, Zhaoqi Liu, James L. Manley

The paper identifies SUGP1 loss as the sole driver of SF3B1 hotspot mutant missplicing in cancer, while AQR loss has an indirect effect.

bioRxiv · Feb 17, 2025 · PreprintMolecular Biology

Splicing dysregulation in glioblastoma alters the function of cell migration-related genes

Minu Seong, Pedro Bak‐Gordon, Zhaoqi Liu, Peter Canoll, James L. Manley

The paper introduces a novel AS analysis method, Semi-Q, to identify GBM-specific splicing events and shows that dysregulated splicing of cell migration-related genes contributes to tumor growth and invasiveness.

Glia · Oct 24, 2024Peer-reviewedMolecular Biology