Author

Jun Yasuda

Tohoku UniversityORCID 0000-0002-3887-6871Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Organism:human· 4 Approach:statistical model· 4 Assay:whole-genome sequencing· 4 Research Focus:database / resource· 1 Research Focus:genome assembly· 1 Research Focus:imputation· 1 Research Focus:variant calling· 1 Research Focus:variant effect prediction· 1

Frequent Co-Authors

Kengo KinoshitaiD· 4 shared Masayuki P. YamamotoiD· 4 shared Shu TadakaiD· 4 shared Akihito OtsukiiD· 3 shared Chinatsu Gocho· 3 shared Fumiki KatsuokaiD· 3 shared Gen TamiyaiD· 3 shared Mika Sakurai‐YagetaiD· 3 shared

Activity by Year

2019-2021 · peak 3/yr

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10 top collaborators · 45 mutual co-author links

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4 shared papersGenomics

Kengo KinoshitaORCID

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4 papers

Recent·Most cited

Japonica Array NEO with increased genome-wide coverage and abundant disease risk SNPs

Mika Sakurai‐Yageta, Kazuki Kumada, Chinatsu Gocho, Satoshi Makino, Akira Uruno, Shu Tadaka, Ikuko N. Motoike, Masae Kimura, Shin Ito, Akihito Otsuki, Akira Narita, Hisaaki Kudo, Yuichi Aoki, Inaho Danjoh, Jun Yasuda, , Kengo Kinoshita

The paper introduces Japonica Array NEO, a SNP array for the Japanese population with enhanced coverage and disease risk SNPs, showing high imputation quality and utility in genotyping cohorts.

The Journal of Biochemistry · May 12, 2021Peer-reviewedGenomics

Novel candidates of pathogenic variants of the BRCA1 and BRCA2 genes in a 3,552 Japanese whole-genome sequence dataset (3.5KJPNv2)

Hideki Tokunaga, Keita Iida, Atsushi Hozawa, Soichi Ogishima, Yoh Watanabe, Shogo Shigeta, Muneaki Shimada, Yumi Yamaguchi‐Kabata, Shu Tadaka, Fumiki Katsuoka, Shin Ito, Kazuki Kumada, Yohei Hamanaka, Nobuo Fuse, Kengo Kinoshita, , Jun Yasuda

The paper identifies seven new potentially pathogenic BRCA1/BRCA2 variants in a Japanese population using computational scores and cohort analysis.

PLoS ONE · Jan 11, 2021Peer-reviewedGenetics

Construction and Integration of Three De Novo Japanese Human Genome Assemblies toward a Population-Specific Reference

Jun Takayama, Shu Tadaka, Kenji Yano, Fumiki Katsuoka, Chinatsu Gocho, Takamitsu Funayama, Satoshi Makino, Yasunobu Okamura, Atsuo Kikuchi, Sachiyo Sugimoto, Junko Kawashima, Akihito Otsuki, Mika Sakurai‐Yageta, Jun Yasuda, Shigeo Kure, , Gen Tamiya

This paper constructs and integrates three de novo Japanese human genome assemblies to create a population-specific reference, improving variant calling accuracy for Japanese individuals.

Nature Communications · Jan 11, 2021Peer-reviewedGenomics

3.5KJPNv2, An allele frequency panel of 3,552 Japanese Individuals

Shu Tadaka, Fumiki Katsuoka, Masao Ueki, Kaname Kojima, Satoshi Makino, Sakae Saito, Akihito Otsuki, Chinatsu Gocho, Mika Sakurai‐Yageta, Inaho Danjoh, Ikuko N. Motoike, Yumi Yamaguchi‐Kabata, Matsuyuki Shirota, S. Koshiba, Masao Nagasaki, , Kengo Kinoshita

The paper constructs a population-level allele frequency panel of 3,552 Japanese individuals using a standardized pipeline and makes it publicly available.

bioRxiv · Jan 25, 2019 · PreprintGenomics