Author

Deepavali Chakravarti

The University of Texas MD Anderson Cancer CenterORCID 0000-0002-3961-4734Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Molecular Biology· 1

Signature Assays, Organisms & Methods

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Research Focus:benchmarking· 1 Assay:bulk RNA-seq· 1 Research Focus:database / resource· 1 Research Focus:differential expression· 1 Research Focus:gene regulatory network inference· 1 Organism:human· 1 Approach:machine learning (classical)· 1 Approach:statistical model· 1

Frequent Co-Authors

Anthony William MaressoiD· 1 shared Anubama RajaniD· 1 shared Clarissa Estrella· 1 shared Ganesh SwaminathaniD· 1 shared HarshaVardhan DoddapaneniiD· 1 shared James C. FleetiD· 1 shared Joseph F. PetrosinoiD· 1 shared Kali Deans-FielderiD· 1 shared

Activity by Year

2021-2021 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

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1 shared paperMolecular Biology

Anthony William MaressoORCID

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1 paper

Recent·Most cited

Molecular BiologyPhysiological GenomicsPeer-reviewedOct 6, 2021

Drivers of Transcriptional Variance in Human Intestinal Epithelial Organoids

Zachary K. Criss, Nobel Bhasin, Sara C. Di Rienzi…·Noah F. Shroyer

This study identifies major sources of transcriptomic variation in human intestinal organoids, showing that culture methods like substrate and format have large effects compared to experimental manipulations.

44 citationstop 5%

humanbulk RNA-seq

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