Author

Yunfan Xu

Tongji UniversityORCID 0000-0002-4037-3253Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Research Focus:gene regulatory network inference· 2 Approach:statistical model· 2 Organism:human· 1 Approach:machine learning (classical)· 1 Organism:mouse· 1 Assay:scATAC-seq· 1 Assay:scRNA-seq· 1 Assay:spatial transcriptomics· 1

Frequent Co-Authors

Chenfei WangiD· 2 shared Xin DongiD· 2 shared Hailin Wei· 1 shared Ke TangiD· 1 shared Tong HaniD· 1 shared Yawei GaoiD· 1 shared Zhanhe Chang· 1 shared

Activity by Year

2022-2024 · peak 1/yr

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7 top collaborators · 15 mutual co-author links

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2 shared papersBioinformatics

Chenfei WangORCID

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2 papers

Recent·Most cited

BioinformaticsBioinformaticsPeer-reviewedJul 1, 2024

Single-cell and spatial multiomic inference of gene regulatory networks using SCRIPro

Zhanhe Chang, Yunfan Xu, Xin Dong…·Chenfei Wang

SCRIPro infers gene regulatory networks from single-cell and spatial multi-omics data, outperforming existing methods in reconstructing cell type-specific GRNs.

18 citations

humanmouse

𝕏 PostBluesky

BioinformaticsNucleic Acids ResearchPeer-reviewedSep 14, 2022

Single-cell Gene Regulation Network Inference by Large-scale Data Integration

Xin Dong, Ke Tang, Yunfan Xu…·Chenfei Wang

This paper introduces SCRIP, a method that integrates scATAC-seq and TR ChIP-seq data to infer single-cell TR activity and gene regulation networks, showing improved performance over existing methods.

14 citations

scATAC-seqstatistical model

𝕏 PostBluesky