Timofey Skvortsov

Ptolemaea: consensus, comprehensive annotation of antiviral defence systems in bacterial genomes

Ptolemaea harmonizes antiviral defence system annotations across multiple tools to maximize recovery and resolve discrepancies in bacterial genomes.

A novel approach to Caudoviricetes taxonomy utilising whole proteome structure-structure comparison

The paper presents a structure-based classification framework for Caudoviricetes using whole-proteome structural clustering to resolve distant viral relationships.

Decoding Protein Dynamics: ProFlex as a Linguistic Bridge in Normal Mode Analysis

This paper uses normal mode analysis on AlphaFold-predicted structures to define ProFlex, an alphabet summarizing protein flexibility, aiming to enhance understanding of protein function.

Application of a Machine Learning Approach Towards the Targeted Identification of Phage Depolymerases

The paper develops a machine learning model to identify phage depolymerases with 90% accuracy using amino acid features.

Rapid Mycobacterium tuberculosis spoligotyping from uncorrected long reads using Galru

Galru rapidly predicts Mycobacterium tuberculosis spoligotypes from uncorrected long reads with performance comparable to short read methods.