Thanh Le-Viet

This study examines the genomic characteristics and microbiome composition in three cases of Campylobacter and Salmonella co-infections, revealing distinct pathogen strains and microbiome profiles.

This study sequenced K. pneumoniae isolates from Southern Ghana, identifying genetic diversity, antimicrobial resistance, and virulence traits, highlighting the need for genomic surveillance.

A uniformly processed set of 2,440,377 bacterial and archaeal genomes with search tools and annotations, plus an AI-mined peptide set yielding ATB20, active in a mouse skin infection model.

hAMRonization standardizes AMR gene detection outputs from multiple tools into a unified format for easier analysis and integration.

AlbaTraDIS analyzes transposon mutagenesis data to identify genes involved in stress survival, demonstrating its utility in identifying Triclosan resistance genes in E. coli.

CoronaHiT is a method for high-throughput SARS-CoV-2 genome sequencing that improves coverage and throughput compared to existing protocols.

Galru rapidly predicts Mycobacterium tuberculosis spoligotypes from uncorrected long reads with performance comparable to short read methods.